Duterte will meet Abe to discuss matters of mutual interest to both countries, including security, economic and defense cooperation.
The Japan Meteorological Agency said the earthquake occurred at 2:10 pm in the Tottori prefecture, about 700 kilometers west of Tokyo.
Thailand's ousted prime minister Yingluck Shinawatra has 45 days to appeal the order.
The Philippines will maintain its trade and economic ties with the United States, Trade Minister Ramon Lopez said.
Typhoon Haima, the strongest storm to hit the Philippines in three years, and inundated vast tracts of rice and corn fields.
The ferry capsized on Saturday in the river near Kanni after hitting a rock on its voyage from Homelin to Monywa.
While Turkey claimed killing 200 members of the Syrian Kurdish militia, a commander of the group said no more than 10 fighters were killed.
Dodi Suridi, was captured a day after the Jan 14 attack that killed eight people, who police said claimed allegiance to the IS group.
There were no immediate reports of casualties from Haima which hit the northern Philippines on Wednesday with destructive 225 kmh winds and heavy rain.
A temporary ceasefire to allow trapped civilians and rebels to leave the besieged city via two designated corridors has come into effect.